I am a contributor to several open source projects, listed below. I have developed a number of preprocessing scripts and user subroutines for the Abaqus finite element solver, which are also below.
A C++/Python library for spatial modelling of vascularized tissues:
A Python wrapper for Chaste, a library for discrete modelling of soft tissues.
A C++ library for computational physiology, including continuum and discrete soft tissue models.
An automatic Python wrapper generator for C++ for PyBind or Boost Python, built on CAST-XML. Link.
A collection of scripts for segmentation of vessel networks from 3D image stacks. Link.
Scripts for algorithmically generating and rendering 3D models of lamps with Blender. Link.